Imaris Learning: Off the Beaten Track - Biofilm and Filament Analysis

Off the Beaten Track - Biofilm and Filament Analysis

March 2016

  • Analysis of relative position of biological object in 3D space and time (Surface object contact and overlap area, “kiss and run “ analysis – contact duration)
  • Biofilm analysis - shape and structure characteristics of the 3D reconstructed biofilm volumes, any other surface object or cell (i.e. thickness, roughness)
  • Filament analysis - automated bouton (varicosity) detector and analysis per segment, quantification of neuron terminal endings, intensity measurements along the filament and spine structures
Multimedia Library
Application Images (2)
Publications Database
Use of a High-throughput In Vitro Microfluidic System to Develop Oral Multi-species Biofilms
Identification of the amino acids essential for LytSR-mediated signal transduction in Staphylococcus aureus and their roles in biofilm-specific gene expression
Protocols for Microcosms for Growing Biofilms on Hydrophobic Substrates: A Polyphasic Approach to Study Biodiversity, Metabolic Activity, and Biofilm Architecture
The correlation between biofilm biopolymer composition and membrane fouling in submerged membrane bioreactors
Effects of Epigallocatechin gallate against Enterococcus faecalis biofilm and virulence
Biofouling in reverse osmosis processes: The roles of flux, crossflow velocity and concentration polarization in biofilm development
Extracellular biogenic nanomaterials inhibit pyoverdine production in Pseudomonas aeruginosa: a novel insight into impacts of metal(loid)s on environmental bacteria
Effect of Biofilms on Recalcitrance of Staphylococcal Joint Infection to Antibiotic Treatment
Role of Porphyromonas gingivalis gingipains in multi-species biofilm formation
The roles of Pseudomonas aeruginosa extracellular polysaccharides in biofouling of reverse osmosis membranes and nitric oxide induced dispersal
Pfs promotes autolysis-dependent release of eDNA and biofilm formation in Staphylococcus aureus
Characterization of biofouling in a lab-scale forward osmosis membrane bioreactor (FOMBR)
Staphylococcus aureus glucose-induced biofilm accessory proteins, GbaAB, influence biofilm formation in a PIA-dependent manner
Membrane permeabilization underlies the enhancement of extracellular bioactivity in Shewanella oneidensis by a membrane-spanning conjugated oligoelectrolyte
The biofilm matrix destabilizers, EDTA and DNaseI, enhance the susceptibility of nontypeable Hemophilus influenzae biofilms to treatment with ampicillin and ciprofloxacin
A model-based approach to detect interspecific interactions during biofilm development
Rapid metabolic profiling of developing Pseudomonas aeruginosa biofilms by high-resolution mass spectrometry fingerprinting
A comparison of saturated steam and superheated steam for inactivation of Escherichia coli O157:H7, Salmonella Typhimurium, and Listeria monocytogenes biofilms on polyvinyl chloride and stainless steel
A Sporulation Factor Is Involved in the Morphological Change of Clostridium perfringens Biofilms in Response to Temperature
On the influence of the culture conditions in bacterial antifouling bioassays and biofilm properties: Shewanella algae, a case study

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