Introduction to Imaris for Neuroscientists Webinar September 2015 | Bitplane

Imaris for Neuroscientists

September 2015

This Introduction to Imaris for Neuroscientists webinar focussed on image analysis workflows ideal for researchers working in neuroscience. This included image processing tips and tricks to improve quality of the signal, automated and semi-manual methods of neuron tracing and an automated spine detection method. We also demonstrated how to do the Sholl analysis and calculate convex hull surface for neurons in Imaris, as well as present customizable image analysis functionality to classify dendritic spines according to their shape or measure distance from filaments to selected objects (like synapses or synaptic vesicles etc.).

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Application Images (7)
Publications Database
PERINATAL HIGH FAT DIET INCREASES HIPPOCAMPAL VULNERABILITY TO THE ADVERSE EFFECTS OF SUBSEQUENT HIGH-FAT FEEDING
HMGB1 facilitates repair of mitochondrial DNA damage and extends the lifespan of mutant ataxin-1 knock-in mice
3-D Imaging and Analysis of Neurons Infected In Vivo with Toxoplasma gondii
Rapid neurogenesis through transcriptional activation in human stem cells
Novel IL1RAPL1 mutations associated with intellectual disability impair synaptogenesis
Imaging Cleared Intact Biological Systems at a Cellular Level by 3DISCO
Inside Alzheimer brain with CLARITY: senile plaques, neurofibrillary tangles and axons in 3-D
Rax regulates hypothalamic tanycyte differentiation and barrier function in mice
Genetic Manipulation of Cerebellar Granule Neurons In Vitro and In Vivo to Study Neuronal Morphology and Migration
RNA-binding protein Sam68 controls synapse number and local {beta}-actin mRNA metabolism in dendrites
Selective Ablation of Pillar and Deiters' Cells Severely Affects Cochlear Postnatal Development and Hearing in Mice
Enhanced Recruitment of Endosomal Na+/H+ Exchanger NHE6 into Dendritic Spines of Hippocampal Pyramidal Neurons during NMDA Receptor-Dependent Long-Term Potentiation
Relapse Induced by Cues Predicting Cocaine Depends on Rapid, Transient Synaptic Potentiation
Purkinje Cell Ataxin-1 Modulates Climbing Fiber Synaptic Input in Developing and Adult Mouse Cerebellum
Expression of the voltage-gated potassium channel subunit Kv1.1 in embryonic zebrafish Mauthner cell
The Adhesion-GPCR BAI1 Regulates Synaptogenesis by Controlling the Recruitment of the Par3/Tiam1 Polarity Complex to Synaptic Sites
Reinstatement of nicotine seeking is mediated by glutamatergic plasticity
Microglia emerge from erythromyeloid precursors via Pu.1- and Irf8-dependent pathways
Structural and molecular interrogation of intact biological systems
Cerebellar Output in Zebrafish: An Analysis of Spatial Patterns and Topography in Eurydendroid Cell Projections

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