Imaris Whole Slide Reconstruction | Bitplane
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Imaris Whole Slide Reconstruction

The Whole Slide Reconstruction package features both Voloom and Imaris to provide an advanced solution for the alignment, reconstruction, analysis, and data plotting of whole slide scanner images.

Imaris

Imaris core is an essential module which delivers all the necessary functionality for experiment data management, visualization and segmentation of the 3D and 4D microscopy datasets. Combining speed, precision and ease-of-use, Imaris provides a complete set of features for working with multi-channel datasets from a few megabytes to multiple gigabytes in size. Multiple volume rendering and modes, clipping planes, cross-section slices will let you create stunning animations and snapshots ready to be used in publications.

Imaris
  • Search, tag, and manage your data
  • Organize and manage full experiments
  • Use premier volume rendering in 3D/4D
  • Detect objects using Spots and Surfaces
  • Enjoy interactive and intuitive workflows
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Measurement Pro

Imaris MeasurementPro enables researchers to extract critical statistical parameters from their microscopy images thus allowing for the quantification of scientific findings. Imaris MeasurementPro adds shape, size, and intensity based measurement capabilities to the volume rendering, surface rendering and object detection features of Imaris. It allows researchers to interactively classify, group, and filter segmented objects based on any of the calculated statistics. MeasurementPro enables 3D distance and angle measurements in your dataset.

Measurement Pro
  • Obtain, view and export statistics
  • Obtain precise measurements of intensity values
  • Define object-based coordination system to compensate for translational and rotational object movement during observation
  • Measure distances between points within an object
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Imaris Vantage

Welcome to a new era of data interpretation, plotting and presentation. This module enables you to compare and contrast experimental groups by visualizing your image data (segmented and original) in five dimensions as uni- or multi-variate scatterplots. Along with the use of box + whisker (5-number summary) plots Vantage will help you interpret intrinsically complex and dynamic phenomena. ImarisVantage enables researchers to dissect their multi-dimensional, multi-object images by creating a series of fully customizable plots for better understanding of hidden relationships and associations between calculated measurements, objects or groups of objects

Imaris Vantage
  • Create fast, explorative and interactive multi-dimensional plots with real objects
  • Define different variables for each of the 5 dimensions (x,y,z, colour, size)
  • Create side by side ready to publish univariate plots to compare groups
  • Export figures and annotations into your presentations
  • Get preview of the results of: Wilcoxon, T-test, F-test and Kolmogorov-Smirnov
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Voloom

Voloom® is an intuitive and automated software solution for 3D alignment and reconstruction of whole slide scanner images of any size. Voloom enables the examination of tissue slices as a 3D volume thus revolutionizing the way users of whole slide imaging devices can see and interact with the entire 3D sample. Imaris reads Voloom output and can determine a number of key parameters (i.e. volume, shape, surface structure and many more quantitative measures). Voloom is created by microDimensions.

Voloom
  • Automated alignment of serial sections (Voloom)
  • Interactive 3D visualization (Voloom and Imaris)
  • Object detection and analysis (Imaris)
  • Data plotting and hypothesis testing (Imaris)
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Additional Resources

The Imaris Learning Center hosts a wide range of tutorial videos, how-to articles and webinars to guide you through the many features of Imaris. We have provided some links below which will get you started on some of our most recent developments.


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