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This page contains links to web resources providing data and explanations on one of the many topics of 3D/4D life science imaging.
Microscopy& Computer Graphics
Image Processing and Management
- Open Microscopy Environment (OME)
- Basic concepts of digital image processing.
- Java plug-ins for ImageJ (by Michael Unser et al.)
- Advance imaging techniques demo applets (by M. Unser et al.)
Computer Graphics & Hardware
Microscope Simulators, Acquisition Guidelines
- Virtual microscope simulator
- Sampling simulator
- Sampling guidelines for deconvolution (by SVI)
- Microscope resolution calculator (by PFID, Pasteur Institute)
Algorithms used in Imaris
For algorithms used in Imaris the following list of key-words searched on wiki or the web produces essential information.
Spots
Tracking
- Brownian Motion
- Autoregressive time series model
- Linear Assignment Problem
- Hungarian Algorithm
- K-means algorithm
Surfaces
Filament
- Gaussian Filter
- Laplacian of Gaussian Filter
- Shortest Path Problem
- Fast Marching Method
- K-means algorithm
Testimonial
Dr. Gaudenz Danuser, The Scripps Research Institute, La Jolla
Imaris offers a great set of tools for the visualization of time-resolved 3D microscopy data. >>>
Show Cases
Biofilm: 3D Visualization
Prof. Folkesson and Prof. Molin and colleagues, BioCentrum - Technical University of Denmark
Natural conjugative plasmids express factors that can stimulate planktonicbacteria to form biofilm communities.
>>>
High-Resolution Imaging in Zebrafish
Prof. R. Klemke and colleagues, University of California at San Diego
Metastasis, the major cause of death in cancer patients, is a highly dynamic process that occurs in multiple steps, which include disruption of cell-cell adhesion, migration of cells away from the primary tumor and intravasation into the vasculature.
>>>
4D-Tracking with Imaris
Dr. T. Worbs, Prof. R. Förster and, Hannover Medical School, Germany
Automated tracking of T-lymphocyte migration: The present study demonstrates that chemokine receptor CCR7 signaling enhances the motility of CD4+ T cells.
>>>
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