2012 Publication List

Publications Using Results Obtained With Imaris

Peer reviewed publications between 1990 and 2012 that are using Imaris in one of its configurations. If you know of any paper that is missing on this list please report it to publications@bitplane.com

March

Title	Journal	Author	Research	Category	Article
Second harmonic generation microscopy for quantitative analysis of collagen fibrillar structure	Nat. Protocols, 2012. 7(4): 654-669	Chen, X., et al.	Second-harmonic generation (SHG) microscopy Protocol	3D-Visualization	Abstract
A theoretical and non-destructive experimental approach for direct inclusion of measured collagen orientation and recruitment into mechanical models of the artery wall	Journal of Biomechanics, 45(5): 762-771	Hill, M.R., et al.	Bioengineering	3D Visualization FilamentTracer	Abstract
Schwann cell-specific JAM-C-deficient mice reveal novel expression and functions for JAM-C in peripheral nerves	FASEB Journal, 26(3): 1064-1076	Colom, B., et al.	Neuroscience	3D-Visualization	Abstract
Transport into Metal–Organic Frameworks from Solution Is Not Purely Diffusive	Angewandte Chemie, 124(11): 2716-2720	Han, S., et al.	Chemical Engineering	3D-Visualization	Abstract
Synchronously developing collet hairs in Arabidopsis thaliana provide an easily accessible system for studying nuclear movement and endoreduplication	J. Exp. Bot.	Sliwinska, E., J. Mathur, and J.D. Bewley	Plant Genetics	3D Visualization	Abstract
Neuronal Birth Order Identifies a Dimorphic Sensorineural Map	J. Neurosci., 32(9): 2976-2987	Pujol-Marti, J., et al.	Neuroscience	3D-Visualization MeasurementPro	Abstract
Combining imaging and pathway profiling: an alternative approach to cancer drug discovery	Drug Discovery Today, 17(5–6): p. 203-214	Carragher, N.O., V.G. Brunton, and M.C. Frame	Cancer Drug Research	3D-Visualization	Abstract
PhOTO Zebrafish: A Transgenic Resource for In Vivo Lineage Tracing during Development and Regeneration Tunneling Nanotubes Provide a Unique Conduit for Intercellular Transfer of Cellular Contents in Human Malignant Pleural Mesothelioma	PLoS One, 2012. 7(3)	Dempsey, W.P., et al.	Developmental Biology	3D Visualization MeasurementPro ImarisTrack	Abstract
Microtubules Are Essential for Guard-Cell Function in Vicia and Arabidopsis	Mol. Plant	Eisinger, W., D. Ehrhardt, and W. Briggs	Plant Biology	3D Visualization MeasurementPro ImarisTrack	Abstract
Marginating Dendritic Cells of the Tumor Microenvironment Cross-Present Tumor Antigens and Stably Engage Tumor-Specific T Cells	Cancer Cell, 21(3): p. 402-417	Engelhardt, John J., et al.	Cancer Research	3D Visualization MeasurementPro ImarisTrack	Abstract
Src42A-dependent polarized cell shape changes mediate epithelial tube elongation in Drosophila	Nat Cell Biol	Forster, D. and S. Luschnig	Anatomy	3D-Visualization MeasurementPro	Abstract
Sonic Hedgehog Expression in Corticofugal Projection Neurons Directs Cortical Microcircuit Formatio	Neuron, 73(6): 1116-1126	Harwell, Corey C., et al.	Neuroscience	3D-Visualization MeasurementPro	Abstract
The Peritoneal Tumour Microenvironment of High-Grade Serous Ovarian Cance	J.of Pathology	Leinster, D.A., et al.	Cancer Research	3D-Visualization MeasurementPro	Abstract
Macrophage Internal HIV-1 Is Protected from Neutralizing Antibodis	J. Virol., 2012. 86(5): 2826-2836	Koppensteiner, H., et al.	Virology	3D Visualization Coloc	Abstract
Biophysical stimulation induce demyelination via an integrin-dependent mechanism	Annals of Neurology	Lin, M.Y., et al.	Biomedical Engineering	3D Visualization Coloc	Abstract

Additional 61 Publications

February

Title	Journal	Author	Research	Category	Article
The Loop Diuretic Bumetanide Blocks Posttraumatic p75NTR Upregulation and Rescues Injured Neurons	J. Neurosci., 32(5): 1757-1770.	Shulga, A., et al.	Neuroscience	3D-Visualization	Abstract
Facilitation of AMPA Receptor Synaptic Delivery as a Molecular Mechanism for Cognitive Enhancement	PLoS Biol, 10(2).	Knafo, S., et al.	Neuroscience	3D Visualization FilamentTracer	Abstract
MT1-MMP regulates the PI3K (delta) Mi-2/NuRD-dependent control of macrophage immune function	Genes & Dev., 2012. 26(4): p. 395-413.	Shimizu-Hirota, R., et al.	Immunology	3D Visualization	Abstract
Connexin43 ablation in foetal atrial myocytes decreases electrical coupling, partner connexins, and sodium current	Cardiovasc Res	Desplantez, T., et al.	Cardiovascular Research	3D-Visualization	Abstract
Myenteric neurons of the mouse small intestine undergo significant electrophysiological and morphological changes during postnatal development	Journal of Physiology	Foong, J.P.P., et al.	Neuroscience	3D-Visualization	Abstract
Contrast-Enhanced Magnetic Resonance Microangiography Reveals Remodeling of the Cerebral Microvasculature in Transgenic ArcA(beta) Mice	J. Neurosci., 2012. 32(5): p. 1705-1713	Klohs, J., et al.	Neuroscience	3D Visualization	Abstract
Automated quantification of synapses by fluorescence microscopy	J.Neuroscience Methods, 204(1): 144-149	Schätzle, P., et al.	Neuroscience	3D-Visualization MeasurementPro ImarisXT	Abstract
Synergistic Interaction between Candida albicans and Commensal Oral Streptococci in a Novel In Vitro Mucosal Model	Infect. Immun., 2012. 80(2): p. 620-632.	Diaz, P.I., et al.	Periodontology	3D-Visualization MeasurementPro	Abstract
Replication-Competent Influenza A Virus That Encodes a Split-Green Fluorescent Protein-Tagged PB2 Polymerase Subunit Allows Live-Cell Imaging of the Virus Life Cycle	J. Virol., 2012. 86(3): p. 1433-1448	Avilov, S.V., et al.	Virology	3D Visualization MeasurementPro ImarisTrack	Abstract
Astrocytes Control the Development of the Migration-Promoting Vasculature Scaffold in the Postnatal Brain via VEGF Signaling	J. Neurosci., 2012. 32(5): p. 1687-1704.	Bozoyan, L., J. Khlghatyan, and A. Saghatelyan	Neurobiology	3D Visualization MeasurementPro ImarisTrack	Abstract
Endoplasmic Reticulum Stress-Sensing Mechanism Is Activated in Entamoeba histolytica upon Treatment with Nitric Oxide Spatial Localisation of Actin Filaments across Developmental Stages of the Malaria Parasite	PLoS One, 2012. 7(2)	Santi-Rocca, J., et al.	Cell Biology	3D Visualization MeasurementPro	Abstract
Statistical platform to discern spatial and temporal coordination of endothelial sprouting	Integrative Biology, 4(3)	Yuen, W.W., et al.	Biological Engineering	3D Visualization MeasurementPro ImarisTrack	Abstract
Strength in the Periphery: Growth Cone Biomechanics and Substrate Rigidity Response in Peripheral and Central Nervous System Neurons	Biophysical Journal, 102(3): 452-460	Koch, D., et al.	Neuroscience	3D Visualization FilamentTracer	Abstract
Bacterial inclusion bodies: making gold from waste	Trends in Biotechnology, 30(2): 65-70	García-Fruitós, E., et al.	Biotechnology	3D Visualization	Abstract
Single Point Mutation in Bin/Amphiphysin/Rvs (BAR) Sequence of Endophilin Impairs Dimerization, Membrane Shaping, and Src Homology 3 Domain-mediated Partnership	J. Biol. Chem., 287(6): 4232-4247	Gortat, A., et al.	Biological Chemistry	3D Visualization	Abstract
Ubiquitin-dependent regulation of COPII coat size and function	Nature, 2012. 482(7386): p. 495-500	Jin, L., et al.	Molecular Biology	3D Visualization	Abstract
A role for primary cilia in glutamatergic synaptic integration of adult-born neurons	Nat Neurosci, 15(3): 399-405	Kumamoto, N., et al.	Neuroscience	3D Visualization FilamentTracer	Abstract
Cellulose microfibril crystallinity is reduced by mutating C-terminal transmembrane region residues CESA1A903V and CESA3T942I of cellulose synthae	PNAS	Harris, D.M., et al.	Plant Chemistry	3D Visualization MeasurementPro ImarisTrack	Abstract
Catecholamine-induced cardiac mitochondrial dysfunction and mPTP opening: protective effect of curcumi	Am J Physiol Heart Circ Physiol, 302(3)	Izem-Meziane, M., et al.	Cardiovascular Research	3D Visualization MeasurementPro	Abstract
Monitoring the glioma tropism of bone marrow-derived progenitor cells by 2-photon laser scanning microscopy and positron emission tomograph	Neuro Oncology	Hasenbach, K., et al.	Neurobiology	3D Visualization MeasurementPro	Abstract
Synchronous and symmetric migration of Drosophila caudal visceral mesoderm cells requires dual input by two FGF ligands	Development, 139(4): 699-708	Kadam, S., S. Ghosh, and A. Stathopoulos	Developmental Biology	3D Visualization MeasurementPro ImarisTrack	Abstract
Matrix architecture defines the preferential localization and migration of T cells into the stroma of human lung tumors	J Clin Invest, 122(3): 899-910	Salmon, H., et al.	Cancer Research	3D Visualization MeasurementPro ImarisTrack	Abstract
Death Receptors DR6 and TROY Regulate Brain Vascular Development	Developmental Cell, 22(2): 403-417	Tam, Stephen J., et al.	Neuroscience	3D Visualization FilamentTracer	Abstract
Neuroprotective function for ramified microglia in hippocampal excitotoxiciy	J Neuroinflammation, 9:27	Vinet, J., et al.	Neuroscience	3D Visualization FilamentTracer	Abstract
The Diverse and Dynamic Nature of Leishmania Parasitophorous Vacuoles Studied by Multidimensional Imaging	PLoS Negl Trop Dis, 2012. 6(2)	Real, F. and R.A. Mortara	Immunology	3D Visualization MeasurementPro ImarisCell	Abstract

Additional 46 Publications

January

Title	Journal	Author	Research	Category	Article
Sox2 and Mitf cross-regulatory interactions consolidate progenitor and melanocyte lineages in the cranial neural crest	Development, 139(2): p. 397-410	Adameyko, I., et al.	Developmental Biology	Visualization MeasurementPro	Abstract
Live cell division dynamics monitoring in 3D large spheroid tumor models using light sheet microscopy	Cell Division, 6(1): p. 22	Lorenzo, C., et al.	Cancer Research	3D-Visualization	Abstract
Afadin, A Ras/Rap Effector That Controls Cadherin Function, Promotes Spine and Excitatory Synapse Density in the Hippocampus	J. Neurosci., 32(1): p. 99-110	Beaudoin, G.M.J., III, et al.	Neuroscience	3D Visualization FilamentTracer	Abstract
An artery-specific fluorescent dye for studying neurovascular coupling	Nat Meth	Shen, Z., et al.	Neuroscience	3D-Visualization	Abstract
Chicken Cells Sense Influenza A Virus Infection through MDA5 and CARDIF Signaling Involving LGP2	J. Virol., 86(2): p. 705-717	Liniger, M., et al..	Virology	3D-Visualization	Abstract
Temporal pattern of expression and colocalization of microglia/macrophage phenotype markers following brain ischemic injury in mice	J Neuroinflammation, 8: p. 174	Perego, C., S. Fumagalli, and M.G. De Simoni	Neuroscience	3D-Visualization	Abstract
Dyrk1A Influences Neuronal Morphogenesis Through Regulation of Cytoskeletal Dynamics in Mammalian Cortical Neurons	Cereb Cortex	Martinez de Lagran, M., et al.	Neuroscience	3D Visualization FilamentTracer	Abstract
Integrins Regulate Repulsion-Mediated Dendritic Patterning of Drosophila Sensory Neurons by Restricting Dendrites in a 2D Space	Neuron, 73(1): p. 64-78	Han, C., et al.	Neuroscience	3D-Visualization FilamentTracer Coloc	Abstract
PSD-95 is post-transcriptionally repressed during early neural development by PTBP1 and PTBP2	Nat Neurosci	Zheng, S., et al.	Neuroscience	3D Visualization FilamentTracer ImarisXT	Abstract
Apelin Is Required for Non-Neovascular Remodeling in the Retina	Am J Pathol, 180(1): p. 399-409	McKenzie, J.A., et al.	Cell Biology	3D-Visualization MeasurementPro	Abstract
The smallest insects evolve anucleate neurons	Arthropod Structure & Development, 2012. 41(1): p. 29-34	Polilov, A.A.	Entomology	3D-Visualization MeasurementPro	Abstract
Structural differences in the osteocyte network between the calvaria and long bone revealed by three-dimensional fluorescence morphometry, possibly reflecting distinct mechano-adaptations and sensitivities	Biochem. Biophysical Research Comm. 417(2): p. 765-770	Himeno-Ando, A., et al.	Dental Sciences	3D-Visualization MeasurementPro FilamentTracer	Abstract
Phactr4 regulates directional migration of enteric neural crest through PP1, integrin signaling, and cofilin activity	Genes & Dev., 26(1): 69-81	Zhang, Y., T.-H. Kim, and L. Niswander, .	Cell Biology	3D Visualization ImarisTrack	Abstract
Dynein-dependent processive chromosome motions promote homologous pairing in C. elegans meiosis	J. Cell Biol., 2012. 196(1): p. 47-64	Wynne, D.J., et al.	Cell Biology	3D Visualization MeasurementPro ImarisTrack ImarisXT	Abstract
Progressive Polycomb Assembly on H3K27me3 Compartments Generates Polycomb Bodies with Developmentally Regulated Motion Electrotaxis of lung cancer cells in ordered three-dimensional scaffolds	PLoS Genet, 8(1)	Cheutin, T., et al.	Genetics	3D Visualization MeasurementPro ImarisTrack	Abstract
Intravital imaging of CTLs killing islet cells in diabetic mice	J Clin Invest, 122(1): p. 119-131	Coppieters, K., N. Amirian, and M. von Herrath,	Immunology	3D Visualization MeasurementPro ImarisTrack	Abstract
Coherent angular motion in the establishment of multicellular architecture of glandular tissues	PNAS	Tanner, K., et al.	Cancer Research	3D Visualization MeasurementPro ImarisTrack	Abstract
Altered microtubule dynamics in Mecp2-deficient astrocyte	Journal of Neuroscience Researc	Nectoux, J., et al.	Neuroscience	3D Visualization ImarisTrack	Abstract
Barx2 Is Expressed in Satellite Cells and Is Required for Normal Muscle Growth and Regeneratio	Stem Cells, 30(2): p. 253-265	Meech, R., et al.	Pharmacology	3D Visualization Coloc	Abstract
Lymph node B lymphocyte trafficking is constrained by anatomy and highly dependent upon chemoattractant desensitization	Blood, 119(4): p. 978-989	Park, C., et al.	Immunology	3D Visualization ImarisTrack	Abstract
Adenosine A2a receptor antagonists attenuate striatal adaptations following dopamine depletion	Neurobiology of Disease, 45(1) 409-416	Peterson, J.D., J.A. Goldberg, and D.J. Surmeier	Neuroscience	3D Visualization FilamentTracer	Abstract
Activation of autophagy by inflammatory signals limits IL-1[beta] production by targeting ubiquitinated inflammasomes for destruction	Nat Immunol	Shi, C.-S., et al.	Immunology	3D-Visualization	Abstract
GLUT4 exocytosis	J. Cell Sci., 124(24): p. 4147-4159	Stockli, J., D.J. Fazakerley, and D.E. James	Insulin regulation	3D-Visualization	Abstract
Campylobacter jejuni Induces Colitis Through Activation of Mammalian Target of Rapamycin Signaling	Gastroenterology, 142(1): p. 86-95	Sun, X., D. Threadgill, and C. Jobin	Immunology	3D-Visualization	Abstract
Tau's role in the developing brain: implications for intellectual disability	Hum. Mol. Genet	Sapir, T., et al.	Genetics	3D Visualization FilamentTracer	Abstract

Additional 56 Publications

2011 Publications